nextflow-development

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100Critical

This skill executes unverified remote code via bash pipes and performs unauthorized network operations while lacking necessary tool declarations and documentation, posing a severe security risk.

ThreatsCI SM CS BC S HITL

Threat Analysis

AI Agent Traps ↗Scanned 6/20/2026

Content InjectionPerceptionclean

Semantic ManipulationReasoningclean

Cognitive StateMemory & Learningclean

Behavioural ControlAction4 findings

SystemicMulti-Agent Dynamicsclean

Human-in-the-LoopHuman Overseerclean

HygienePackaging & Manifest6 findings

Skill Info

Nameanthropics/knowledge-work-plugins/nextflow-development

Registrygithub

Version55447a28e6c7

PURLpkg:github/anthropics/knowledge-work-plugins@55447a28e6c7?skill=nextflow-development

Stars21,418

Installs1,300

Source

Repository ↗SKILL.md ↗

Install

This skill has been flagged as potentially malicious. Review the findings below before installing.

GitHub

1,300 installs

Skills.shDocs

npx skills add https://github.com/anthropics/knowledge-work-plugins

Assessments (3)

AI Agent Traps ↗

Remote code download and execution detectedcriticalcommand executionAML.T0050AML.T0053AML.T0072LLM05:2025LLM06:2025

Remote code download and execution detected

100% confidenceline 75

curl -s https://get.nextflow.io \| bash

Unverified shell execution for environment setupmediumsupply chainAML.T0010AML.T0019AML.T0058LLM03:2025

The skill provides a command to pipe a remote script directly into bash, which is a common vector for executing arbitrary, unverified code.

90% confidence

curl -s https://get.nextflow.io | bash

Missing allowed-tools declarationlowunauthorized tool useAML.T0053LLM06:2025

Skill executes commands, writes files, or accesses the network but declares no allowed-tools, so its tool surface cannot be reviewed or constrained.

90% confidence

Undeclared network usagelowunauthorized tool useAML.T0053LLM06:2025

Skill contains network access patterns (HTTP requests, socket connections) without declaring network capability in allowed-tools.

60% confidence

Referenced file missing from skill packagelowpolicy violation

SKILL.md links to "references/geo-sra-acquisition.md" but the file is not part of the skill package — the workflow silently degrades or the content is sourced elsewhere at runtime

90% confidence

[references/geo-sra-acquisition.md](references/geo-sra-acquisition.md)

Referenced file missing from skill packagelowpolicy violation

SKILL.md links to "references/pipelines/atacseq.md" but the file is not part of the skill package — the workflow silently degrades or the content is sourced elsewhere at runtime

90% confidence

[references/pipelines/atacseq.md](references/pipelines/atacseq.md)

Referenced file missing from skill packagelowpolicy violation

SKILL.md links to "references/pipelines/rnaseq.md" but the file is not part of the skill package — the workflow silently degrades or the content is sourced elsewhere at runtime

90% confidence

[references/pipelines/rnaseq.md](references/pipelines/rnaseq.md)

Referenced file missing from skill packagelowpolicy violation

SKILL.md links to "references/pipelines/sarek.md" but the file is not part of the skill package — the workflow silently degrades or the content is sourced elsewhere at runtime

90% confidence

[references/pipelines/sarek.md](references/pipelines/sarek.md)

Referenced file missing from skill packagelowpolicy violation

SKILL.md links to "references/troubleshooting.md" but the file is not part of the skill package — the workflow silently degrades or the content is sourced elsewhere at runtime

90% confidence

[references/troubleshooting.md](references/troubleshooting.md)

Missing licenseinfopolicy violation

Skill does not specify a license field. Specifying a license helps users understand usage terms.

100% confidence

Version History (2)

4fc672a0eb8b100Critical6/30/2026 55447a28e6c7current100Critical6/20/2026

Badge

Markdown

[![Mondoo Skill Check](https://mondoo.com/ai-agent-security/api/badge/github/anthropics/knowledge-work-plugins/nextflow-development.svg)](https://mondoo.com/ai-agent-security/skills/github/anthropics/knowledge-work-plugins/nextflow-development)

HTML

<a href="https://mondoo.com/ai-agent-security/skills/github/anthropics/knowledge-work-plugins/nextflow-development"><img src="https://mondoo.com/ai-agent-security/api/badge/github/anthropics/knowledge-work-plugins/nextflow-development.svg" alt="Mondoo Skill Check" /></a>

Image URL

https://mondoo.com/ai-agent-security/api/badge/github/anthropics/knowledge-work-plugins/nextflow-development.svg

View on GitHub↗

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